PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474123
Common NameARALYDRAFT_474123
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 301aa    MW: 33079.7 Da    PI: 10.0022
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474123genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +          R+  ++k++w++
           474123  5 KQKWTQEEESALKSGVIKHGPGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.594158IPR017930Myb domain
SuperFamilySSF466894.99E-15271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-13456IPR009057Homeodomain-like
SMARTSM007175.4E-7459IPR001005SANT/Myb domain
PfamPF002491.2E-8555IPR001005SANT/Myb domain
CDDcd116601.09E-17656No hitNo description
SMARTSM005265.8E-13113180IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.48E-15116194IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.532117185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.6E-13117186IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.7E-7122178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGAPKQKWTQ EEESALKSGV IKHGPGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSREKSR LAVKRTLSLP KQEENSLALT NSLQSDEEMV DATSGLQVSS NPAPRRPNVR  120
LDSLIMEAIS TLKEPGGCNK TTIGAYIEDQ YHAPMDFKRL LSTKLKYLTA CGKLVKVKRK  180
YRIPNSTPLS SHRKKGLGAF AGRQRTSSLP SPKTDRDEVN FQTRSQIDTE LARMKSMNVH  240
EAAAVAAQAV AEAEALMAEA EEAAKEAEAA EAEAEAAQAF AEEASKTLKG RNNCKMMIRA  300
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Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU836240.0U83624.1 Arabidopsis thaliana telomere repeat binding factor 1 (TRB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894224.10.0telomere repeat binding factor 1
SwissprotQ8VWK40.0TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLD7KFT70.0D7KFT7_ARALL; Telomere repeat binding factor 1
STRINGfgenesh2_kg.1__4077__AT1G49950.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87222539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-176telomere repeat binding factor 1